There are some people suggested to edit the registry but the proper way to disable CHKDSK from starting up is using the /x switch on chkntfs command in command prompt. The /x switch will exclude a drive from the default boot-time check. If you have drive C: as your hard drive, then the command to disable chkdsk from scanning C: drive would be:
chkntfs /x c:
If you have 2 drive, C and D, you can disable chkdsk with the command below
chkntfs /x c: d:
The chkntfs utility works by modifying the BootExcecute value in the system registry. The BootExecute value is located in the following registry key:
HKEY_LOCAL_MACHINE\SYSTEM\CURRENTCONTROLSET\CONTROL\Session Manager
The default value is for BootExecute is autocheck autochk *. When you use the /x switch, it will add a /k parameter prior to the asterisk. The /k parameter excludes volumes from being checked for the presence of a dirty bit.
For example, I run the command chkntfs /x c: in command prompt. This command would modify this registry entry to autocheck autochk /k:c *
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